Chocolate Chip Protein Bagels

Featured in: Hearty Breakfasts

These chocolate chip protein bagels offer a soft, chewy texture enhanced by pockets of semisweet chocolate. The dough, enriched with protein powder and gently boiled before baking, provides a satisfying bite ideal for breakfast or a snack. A smooth peanut butter drizzle adds a touch of sweetness and creaminess, balancing the rich chocolate and wholesome ingredients. With simple steps including kneading and a brief water boil, these bagels deliver a nourishing and flavorful experience that can be customized with alternative add-ins for variety.

Updated on Tue, 17 Feb 2026 16:24:00 GMT
Decadent chocolate chip protein bagels topped with a smooth peanut butter drizzle, ideal for a healthy breakfast or snack. Save to Pinterest
Decadent chocolate chip protein bagels topped with a smooth peanut butter drizzle, ideal for a healthy breakfast or snack. | krispyrecipes.com

My roommate challenged me to make bagels from scratch one Sunday morning, convinced it was impossible without a bakery oven. Three hours later, when I pulled golden, chewy bagels from my modest home oven, she took one bite of the chocolate chip version and went quiet—the kind of quiet that means you've won something bigger than a bet. Adding protein powder felt like a natural move, turning breakfast into actual fuel without losing any of that tender, satisfying chew that makes homemade bagels worth the effort.

I made these for my brother's post-basketball game breakfast, and he asked for the recipe before finishing his first bagel—something he's never done in his life. Watching him dunk one in coffee while sitting in his sweaty gym clothes, totally unbothered about the chocolate smudging his chin, felt like I'd unlocked some kind of universal comfort food code.

Ingredients

  • Bread flour (2 cups): This matters because it has higher gluten content than all-purpose, giving you that chewy bagel texture you're after—don't skip it thinking all-purpose will work the same.
  • Vanilla protein powder (1 cup): Choose a powder that dissolves smoothly and doesn't add weird aftertaste; I learned this the hard way after a batch tasted faintly chalky.
  • Instant dry yeast (2 tsp): Make sure yours isn't expired—stale yeast means flat, lifeless bagels that disappoint.
  • Warm water (3/4 cup at 110°F): Too hot kills the yeast, too cold and nothing rises; use a thermometer if you're unsure, because your fingers aren't reliable judges.
  • Melted unsalted butter (1 tbsp): Unsalted lets you control the sodium and keeps the dough tender without overdoing it.
  • Semisweet chocolate chips (1/2 cup): Fold these in gently after the dough is mostly kneaded so they stay whole instead of melting into brown streaks.
  • Honey or brown sugar (2 tbsp for water bath): This adds subtle flavor to the boiling water and creates that signature bagel crust you can't fake with just salt.
  • Creamy peanut butter (1/4 cup for drizzle): Room temperature peanut butter mixes smoothly with milk; cold peanut butter seizes up and gets lumpy.

Instructions

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Mix your dry foundations:
Whisk bread flour, protein powder, sugar, yeast, and salt together in a large bowl, making sure the yeast distributes evenly so you don't get inactive clumps. This takes maybe a minute and sets up everything that comes next.
Bring it together:
Pour in warm water and melted butter, then mix with your hands or a wooden spoon until a shaggy, slightly rough dough forms. Don't worry about smoothness yet—that comes with kneading.
Knead until elastic:
Work the dough by hand or with a dough hook for 6 to 8 minutes, pushing it away from you and folding it back repeatedly until it feels smooth and springy. You'll know it's ready when you poke it and the indentation springs back slowly instead of staying put.
Add chocolate gently:
Sprinkle chocolate chips across the dough and fold them in carefully, using a few more kneading motions until they're scattered throughout without getting crushed. Some chips will melt slightly from the warmth, and that's perfect—it adds little pockets of melted chocolate flavor.
Let it rise:
Oil a bowl lightly, place your dough inside, cover it with a damp kitchen towel, and set it somewhere warm (a turned-off oven with the light on works beautifully) for 30 to 40 minutes until it roughly doubles in size. You'll feel anticipation building as the dough puffs up.
Preheat and shape:
While dough rises, heat your oven to 375°F and line a baking sheet with parchment paper. Punch down the risen dough, divide it into 6 equal pieces, roll each into a ball, then poke a hole in the center and gently stretch the opening until you have a ring with a 2-inch hole.
Boil for the magic:
Bring 2 quarts of water and 2 tablespoons of honey to a gentle rolling boil in a wide pot—this is the secret step that gives bagels their unique texture. Working in batches, drop bagels into the water and boil for exactly 30 seconds per side, then fish them out with a slotted spoon and place them on your prepared sheet.
Finish and bake:
Brush each boiled bagel lightly with melted butter—this helps them brown beautifully—then bake for 18 to 20 minutes until the tops turn golden and the bagels feel firm. They'll smell incredible, and you'll fight the urge to eat one before they cool enough not to burn your mouth.
Make the drizzle:
While bagels cool on a wire rack, whisk together peanut butter, milk, and maple syrup until you get a pourable consistency—thinner than peanut butter straight from the jar but thick enough to cling to the bagel. Drizzle it over cooled bagels in thin lines, letting it pool slightly in the holes.
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My neighbor smelled these baking and showed up at my door asking if I was running a secret bagel operation. We split one still warm, and she confessed she'd stopped buying bagels from the store years ago because they never satisfied her—until that moment.

The Protein Powder Advantage

Using protein powder in bagel dough surprised me at first, but it actually makes total sense. The powder adds structure and keeps the bagels filling without making them dense or gummy, which happens sometimes when you overload regular bagels with mix-ins. I started experimenting with vanilla because it pairs beautifully with chocolate, but chocolate protein powder would work too if you want an extra flavor boost. The texture stays light and chewy, which is the whole point of a bagel.

Why Boiling Changes Everything

That quick bath in honey-sweetened water is where the magic happens, and I can't overstate how crucial this step is. The boiling sets the crust before baking even starts, creating that distinctive bagel texture that's crispy outside and tender inside—you literally cannot achieve this by just baking. The starch gelatinizes in the boiling water, which sounds scientific, but what it actually means is you end up with a bagel that has real substance and chew instead of the soft-bread-with-a-hole situation that happens without boiling.

Storage and Variations

These bagels stay fresh in an airtight container for three days, or you can freeze them for up to a month and toast them straight from frozen. Dark chocolate chunks work beautifully instead of milk chocolate chips if you want richness, and dried cranberries or blueberries are wonderful if chocolate isn't your thing. The drizzle can be made ahead too—just store it in the fridge and loosen it with a splash of milk before using.

  • Split bagels horizontally and toast them the next day with the peanut butter drizzle for an even more decadent breakfast.
  • Make the peanut butter drizzle thicker and use it as a spread instead if you prefer a less sweet finish.
  • Sprinkle crushed peanuts or a pinch of sea salt on top of the warm drizzle for texture and visual appeal.
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Golden-brown bagels studded with melty chocolate chips, drizzled with creamy peanut butter for a satisfying protein-packed treat. Save to Pinterest
Golden-brown bagels studded with melty chocolate chips, drizzled with creamy peanut butter for a satisfying protein-packed treat. | krispyrecipes.com

These bagels remind me why homemade food matters—not because it's trendy or Instagram-worthy, but because it tastes real and actually nourishes the people you feed. Once you make them once, you'll want to keep making them.

Common Recipe Questions

How does the protein powder affect the bagels' texture?

Protein powder adds richness and density, creating a chewier texture while boosting nutritional value without overpowering the bagel's classic structure.

Why are the bagels boiled before baking?

Boiling sets the crust and gives bagels their characteristic chew and glossy finish, preventing them from becoming too fluffy or cake-like.

Can I substitute peanut butter in the drizzle?

Yes, alternatives like almond or cashew butter offer different flavors while maintaining the creamy drizzle that complements the bagels.

What is the best way to store these bagels?

Store in an airtight container at room temperature for up to two days or freeze individually to maintain freshness longer.

Are there options for a dairy-free version?

Using plant-based protein powder and milk with dairy-free butter ensures a fully dairy-free option while preserving texture and flavor.

Chocolate Chip Protein Bagels

Soft, chewy bagels with chocolate chips and protein, finished with a creamy peanut butter drizzle.

Prep Duration
20 minutes
Cooking Duration
20 minutes
Overall Time
40 minutes
Created by Mia Harper

Recipe Type Hearty Breakfasts

Skill Level Medium

Cuisine Type American

Total Portions 6 Serving Size

Dietary Considerations Veggie-Friendly

What You’ll Need

Dry Ingredients

01 2 cups bread flour
02 1 cup vanilla protein powder
03 2 tablespoons granulated sugar
04 2 teaspoons instant dry yeast
05 1/2 teaspoon salt

Wet Ingredients

01 3/4 cup warm water (110°F)
02 1 tablespoon melted unsalted butter, plus more for brushing

Add-ins

01 1/2 cup semisweet chocolate chips

Water Bath

01 2 quarts water
02 2 tablespoons honey or brown sugar

Peanut Butter Drizzle

01 1/4 cup creamy peanut butter
02 2 tablespoons milk (dairy or plant-based)
03 1 teaspoon maple syrup or honey

How to Make It

Step 01

Combine Dry Ingredients: In a large bowl, whisk together bread flour, vanilla protein powder, granulated sugar, instant dry yeast, and salt until well combined.

Step 02

Form Dough: Add warm water and melted butter to the dry mixture. Stir until a shaggy dough forms.

Step 03

Knead Dough: Knead by hand or using a dough hook for 6 to 8 minutes until the dough becomes smooth and elastic.

Step 04

Incorporate Chocolate Chips: Gently knead chocolate chips into the dough, distributing them evenly throughout.

Step 05

First Rise: Place dough in a lightly greased bowl, cover with a damp cloth, and let rise in a warm location for 30 to 40 minutes until nearly doubled in volume.

Step 06

Prepare Oven and Baking Sheet: Preheat oven to 375°F. Line a baking sheet with parchment paper.

Step 07

Shape Bagels: Punch down dough and divide into 6 equal portions. Roll each into a ball, create a hole in the center with your thumb, and gently stretch to form a bagel shape.

Step 08

Prepare Boiling Water: Bring 2 quarts of water and honey or brown sugar to a gentle boil in a wide pot.

Step 09

Boil Bagels: Working in batches, boil bagels for 30 seconds per side. Transfer to the prepared baking sheet using a slotted spoon.

Step 10

Brush with Butter: Lightly brush each boiled bagel with melted butter.

Step 11

Bake Bagels: Bake for 18 to 20 minutes until golden brown. Cool slightly on a wire rack.

Step 12

Prepare Peanut Butter Drizzle: Whisk together creamy peanut butter, milk, and maple syrup or honey in a small bowl until smooth and pourable.

Step 13

Finish and Serve: Drizzle peanut butter mixture over cooled bagels and serve.

Tools You’ll Need

  • Large mixing bowl
  • Dough hook or hands for kneading
  • Baking sheet
  • Parchment paper
  • Wide pot
  • Slotted spoon
  • Wire rack
  • Small bowl and whisk

Possible Allergens

Double-check each ingredient for allergens and consult an expert if you're unsure.
  • Contains wheat and gluten
  • Contains dairy (butter and milk)
  • Contains peanuts
  • May contain soy from protein powder or chocolate chips
  • Always verify product labels for potential hidden allergens

Nutritional Information (per serving)

This data is for informational purposes and shouldn't replace professional advice.
  • Calorie Count: 295
  • Total Fat: 9 grams
  • Total Carbohydrates: 41 grams
  • Protein Content: 15 grams