Spaghetti Squash Lasagna Cups

Collection: Bright & Crunchy Morning Plates

Spaghetti squash lasagna cups combine roasted squash strands with creamy ricotta, savory marinara, and melted mozzarella, all baked in a convenient muffin tin for easy serving. These gluten-free, low-carb cups capture classic Italian flavors in lighter, individual portions—ideal for meal prep, weeknight dinners, or entertaining. Customize with fresh basil, or add browned ground meat for a heartier option. They reheat beautifully, making them perfect for busy schedules. Enjoy the comforting taste of lasagna with a nutritious, veggie-forward twist!

A woman with long hair and a white sweater smiles.
Created by Mia Harper
Last updated on Sun, 21 Sep 2025 17:34:53 GMT
A plate of food with spaghetti squash lasagna cups. Save
A plate of food with spaghetti squash lasagna cups. | krispyrecipes.com

These spaghetti squash lasagna cups are the answer to your craving for cheesy lasagna without all the carbs and heaviness They transform humble squash into bite sized treats layered with marinara creamy ricotta and oozing mozzarella making them perfect for lighter dinners lunches meal prep and even holiday parties

I first whipped these up for a New Years party to surprise my gluten free friends and everyone kept raving about how fun and satisfying they were you could see them disappear right off the platter

Ingredients

  • Spaghetti squash: choose a firm unblemished squash that feels heavy for its size the strands are the perfect “noodle” base
  • Olive oil: go for extra virgin for its robust flavor helps caramelize the squash
  • Salt and black pepper: these bring out the natural sweetness of the squash
  • Ricotta cheese: use whole milk for creaminess look for fresh tubs at the deli counter
  • Parmesan cheese: finely grated adds nutty flavor splurge on a wedge and grate your own for best taste
  • Egg: binds the cheese filling for perfect texture
  • Dried Italian herbs: provides a classic flavor blend try toasting them briefly in a dry pan for extra aroma
  • Garlic powder: easier to blend than fresh and gives even flavor
  • Marinara sauce: opt for a jar with minimal sugar and lots of herbs or make your own for extra freshness
  • Mozzarella cheese: shred your own if you can melts better than pre shredded
  • Fresh basil: optional but a pop of green brightness takes it over the top try to use basil that is vibrant green and not wilting

Instructions

Prep the Squash:
Halve the squash lengthwise using a sharp knife keep fingers well away from the blade and scoop out seeds with a spoon for easy removal Brush the inside surfaces with olive oil then sprinkle evenly with salt and pepper This ensures caramelization and flavor all the way through
Roast the Squash:
Place the squash halves cut side down on a parchment lined baking sheet Roast at four hundred degrees Fahrenheit for thirty to forty minutes Check by running a fork over the surface if the strands pull away easily it is ready Cool just enough to handle
Reduce Oven and Prepare Tin:
Lower the oven to three seventy five degrees and grease your muffin tin thoroughly This helps with easy removal later Skipping this step may lead to sticking
Strip and Dry the Squash Strands:
Use a fork to gently tease out all the squash strands Place them on a clean kitchen towel and squeeze firmly to remove extra water Too much moisture may make your cups soggy so do not skip this part
Form the Cups:
Divide the strands into the muffin tin Use fingers or a spoon to press them into the bottom and up the sides making a small well This will hold the cheese and sauce in place during baking
Mix the Ricotta Filling:
In a mixing bowl combine ricotta Parmesan egg dried herbs and garlic powder Stir until completely smooth and no streaks of egg remain This is your creamy rich filling layer
Assemble the Cups:
Place a generous tablespoon of the cheese mixture into each squash cup Then layer a spoonful of marinara sauce on top The sauce should cover the ricotta but not overflow
Add Mozzarella Layer:
Sprinkle mozzarella evenly over each cup Make sure some cheese spills to the edges for those delicious golden crispy bits
Bake to Perfection:
Place the tray in your preheated oven and bake for twenty minutes The cups are done when the cheese on top is bubbling and a deep golden brown Let them cool for five minutes before removing This rest helps set the cups and keeps them intact
Release and Garnish:
Run a thin knife around the edges to loosen each cup before carefully popping them out Sprinkle with chopped fresh basil if you like The aroma as you lift them out is irresistible
Two cups of spaghetti squash lasagna.
Two cups of spaghetti squash lasagna. | krispyrecipes.com

I always look forward to the moment when the first forkful releases gooey cheese from the center My kids love to help layer everything into the tins and it is become a Saturday dinner tradition

Storage Tips

For best freshness store leftover cups in an airtight container in the fridge for up to four days Reheat in a toaster oven or microwave until hot For longer storage wrap the baked and cooled cups individually before freezing They thaw quickly and taste like new after a few minutes in a hot oven

Ingredient Substitutions

Swap out ricotta for cottage cheese for a lighter flavor and texture You can use store bought marinara but a chunky homemade sauce brings more character Want a meat option Layer in cooked ground turkey or beef between the ricotta and marinara for a heartier bite Try a sprinkle of chili flakes if you like a little spicy kick

Serving Suggestions

Offer with a crisp green salad tossed in lemon vinaigrette or next to roasted broccoli Serve these as a main for lunch along with crusty garlic bread or arrange on a platter for appetizers at any party They are delicious even at room temperature so no need to stress over perfect timing

Cultural and Seasonal Context

Spaghetti squash became popular with low carb eaters in the last decade and its unique noodle like texture fits right into Italian American classics like lasagna Peak squash season is fall through winter so these cups are especially comforting in the colder months but work anytime marinara and cheese cravings strike

Seasonal Adaptations

In summer layer in grilled zucchini slices for extra freshness In winter top the finished cups with sautéed mushrooms or spinach In spring swap basil for fresh chopped chives or arugula

Success Stories

A friend made a big batch for a bridal shower and said everyone thought they were restaurant worthy Another reader shared that her toddler asks for “cheese squash muffins” several times a week These are one of those recipes that sneak veggies into meals no one complains about

Freezer Meal Conversion

Allow baked cups to cool completely before wrapping each in parchment and storing in a zipper bag Freeze flat for up to two months Reheat straight from frozen in a hot oven until bubbling for a last minute dinner or lunchbox treat

Two cups of spaghetti squash lasagna.
Two cups of spaghetti squash lasagna. | krispyrecipes.com

Once you try spaghetti squash lasagna cups you may never go back to pasta Based on all the happy reviews they are a guaranteed crowd pleaser for any occasion

Common Recipe Questions

→ How do I prepare the spaghetti squash?

Cut the squash in half, remove seeds, brush with olive oil, season with salt and pepper, then roast until tender. Shred flesh into strands with a fork.

→ Can I use cottage cheese instead of ricotta?

Yes, cottage cheese makes a great substitute for ricotta in the cheese mixture for a slightly different texture and flavor.

→ How can I make these cups heartier?

Add a layer of browned ground turkey or beef between the ricotta and marinara for a more filling option.

→ Are these squash cups good for meal prep?

Absolutely! The cups hold their shape well and reheat nicely. You can even freeze them after baking for later use.

→ Are these cups gluten-free?

Yes, they are naturally gluten-free, but always check marinara and cheese labels for hidden gluten ingredients.

Spaghetti Squash Lasagna Cups

Cheesy spaghetti squash cups with marinara, ricotta, and mozzarella. A gluten-free, low-carb twist on a lasagna classic.

Prep Duration
20 minutes
Cooking Duration
50 minutes
Overall Time
70 minutes
Created by: Mia Harper

Recipe Type: Sunrise Starts

Skill Level: Moderate Challenge

Cuisine Type: Italian-American

Total Portions: 12 Serving Size (12 cups)

Dietary Considerations: Low-Carbohydrate, Veggie-Friendly, No Gluten

What You’ll Need

→ Spaghetti Squash

01 1 medium spaghetti squash (about 2 pounds)
02 1 tablespoon olive oil
03 1/2 teaspoon salt
04 1/4 teaspoon ground black pepper

→ Cheese Mixture

05 1 cup ricotta cheese
06 1/2 cup grated Parmesan cheese
07 1 large egg
08 1/2 teaspoon dried Italian herbs
09 1/4 teaspoon garlic powder

→ Assembly and Topping

10 1 cup marinara sauce
11 1 cup shredded mozzarella cheese
12 2 tablespoons chopped fresh basil (optional)

How to Make It

Step 01

Preheat oven to 400°F. Line a baking sheet with parchment paper.

Step 02

Cut the spaghetti squash in half lengthwise and remove the seeds. Brush the cut sides with olive oil and season with salt and black pepper. Position cut-side down on the lined baking sheet.

Step 03

Roast for 30 to 40 minutes or until the flesh is fork-tender and easily shredded. Allow squash to cool until safe to handle.

Step 04

Reduce oven temperature to 375°F. Grease a 12-cup standard muffin tin.

Step 05

Use a fork to separate the squash flesh into strands. Transfer to a clean towel or cheesecloth, then squeeze to remove excess moisture.

Step 06

Divide the spaghetti squash evenly among the muffin cups, pressing it firmly into the bottoms and up the sides to create a cup shape.

Step 07

In a mixing bowl, blend ricotta cheese, grated Parmesan, egg, dried Italian herbs, and garlic powder until smooth.

Step 08

Add a heaping tablespoon of ricotta mixture to each squash cup. Spoon marinara sauce over the ricotta layer.

Step 09

Sprinkle shredded mozzarella cheese evenly over each cup.

Step 10

Bake for 20 minutes or until the cheese is bubbling and golden brown.

Step 11

Allow cups to cool in the tin for 5 minutes. Carefully loosen edges with a knife and remove from muffin tin. Garnish with chopped fresh basil if desired.

Additional Tips

  1. Add cooked ground turkey or beef for a meat variation by layering it between the ricotta and marinara.
  2. Cottage cheese may be used in place of ricotta for a lighter option.
  3. Store any leftovers in an airtight container; the cups can be reheated or frozen after baking.
  4. Pair with a light Italian red wine or serve alongside sparkling water with lemon.

Tools You’ll Need

  • Sharp kitchen knife
  • Baking sheet
  • Parchment paper
  • Standard 12-cup muffin tin
  • Mixing bowls
  • Spoon
  • Clean towel or cheesecloth

Possible Allergens

Double-check each ingredient for allergens and consult an expert if you're unsure.
  • Contains milk and egg.
  • Gluten-free, but verify marinara sauce and cheese for potential gluten-containing additives.
  • Always check ingredient labels for allergens.

Nutritional Information (per serving)

This data is for informational purposes and shouldn't replace professional advice.
  • Calorie Count: 110
  • Total Fat: 6 grams
  • Total Carbohydrates: 8 grams
  • Protein Content: 7 grams